R/wrapper_to_replicate_R0_and_burden.R
wrapper_to_replicate_R0_and_burden.Rd
The function look up the two R0 values, the number of infections, mild febrile cases and the number of hospitalized cases corresponding to a set of FOI predictions, following the application of a scaling factor representing the assumed reduction in transmission.
wrapper_to_replicate_R0_and_burden(foi_data, scaling_factor, FOI_to_Inf_list, FOI_to_C_list, FOI_to_HC_list, FOI_to_R0_1_list, FOI_to_R0_2_list, parms)
foi_data | dataframe of processed admin unit level foi data. |
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scaling_factor | numeric scaling factor value (0-1) |
FOI_to_Inf_list | list of FOI -> number of infections look up tables for different countries |
FOI_to_C_list | list of FOI -> number of cases look up tables for different countries |
FOI_to_HC_list | list of FOI -> number of hospitalized cases look up tables for different countries |
FOI_to_R0_1_list | list of FOI -> R0 (assumption 1) look up tables for different countries |
FOI_to_R0_2_list | list of FOI -> R0 (assumption 2) look up tables for different countries |
parms | list of user-defined parameters. |