Function reference • ZikaModel

All functions

amplitudes_phases: Amplitude and phase of seasonal forcing

br_brazil_age: Brazil birth rates

calculate_incidence(): Calculate incidence

calculate_mean_of_patch_variables(): Calculate the mean across patches of a model output

calculate_microcases(): Estimates total number of microcephaly cases

calculate_microcases_ZIKV(): Estimates number of microcephaly cases caused by Zika infection

calculate_microcases_baseline(): Estimates baseline number of microcephaly cases

cumsum_across_array_dims(): Cumulative sum over array margin

default_demographics(): Return the default demographic information

deterministic_model(): Deterministic model creation

equilibrium_init_create(): Generate equilibrium state

format_output_H(): Format human model outputs

format_output_M(): Format mosquito model outputs

format_output_Mprop(): Format mosquito proportions

lag_diff(): Calculate lagged differences

lag_diff_array(): Calculate lagged differences for array

mc_prob_ZIKV_pregn: ZIKV-induced microcephaly risk during pregancy

nn_links: Patches' nearest neighbors

parameters_deterministic_model(): Create a list of parameters

plot(<Zika_model_simulation>): Plot human or mosquitoes states

run_deterministic_model(): Run the deterministic version of the Zika model

sum_across_array_dims(): Sum over aray margin